YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60466143
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKTVIIIGG GISGLALAQG LSNNGIKFKI FERDEAINFR DQGYRVRVSP EGSNALKTML  60
   61 SEDLWNLFKD SCARTTFGMS SINAIDGKLL KRAPNFSPVG KSSMDENMVF SADRTNLRNL 120
  121 LTLTIENHIE YNKKFIRYEL INYGGGGSKV VAHFSDGTSF EGDLIVGADG VNSKVKKQLI 180
  181 PQCKTFDTNG RFIFGKTEIS NHILDTLPAS AMEWITTVND AEKGLMIFME PIKFKPINSK 240
  241 LPDGCSKFSP ETTDYIYWVL LGQAQAFEKS DEELFKMSPS QLKEHQLHLV RNWDPRFQEI 300
  301 IKSSFDNKSC YLGVTSSFPD IYQWETNENV TLIGDAVHNM SPTGGAGANT ALQDCPILLD 360
  361 AIKNGLKKED LNQYEAKMRL NAKPNIEGSL MGAKRLYNFK SIEECKVIDQ

Type	Start	End	Confidence
Signal Peptide	1	18	0.85
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	410	0.99