YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGC_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDHHLNHRI INNINASSSS SSSSSPVQTN ININSANNTN NNNNNNNNNN NNNNNNNNNI  60
   61 DNKWKKNLYE KQPYSDNYTD ETFLIGLVQN ANFIKYDFWT VVLDSFTVSQ QITSVILFAI 120
  121 IFFHSLKHTL TLPFLVAMAG GFLVLGYIAI IIIDPSANFL SIRSSFLHII LLFGTVYGLS 180
  181 PVLRTLTNSF SDDTIWALTF ILLLAHLFFH DYGYTNNESQ KFSAPVSLNA AIFASVLLGS 240
  241 RLPSNIHVFV LISYAIETFA LFPIFRHHLK RHSMELHVGL TVILCVTCSL LLLGMSKLLA 300
  301 LIYIGIIGTI TFVCPLWLIF IQKYKNEING PWDEASVISQ SGGEF

Type	Start	End	Confidence
Cytoplasmic	1	100	0.85
Transmembrane Helix	101	123	0.75
Non-Cytoplasmic	124	129	0.58
Transmembrane Helix	130	153	0.89
Cytoplasmic	154	163	0.61
Transmembrane Helix	164	186	0.84
Non-Cytoplasmic	187	193	0.67
Transmembrane Helix	194	214	0.88
Cytoplasmic	215	221	0.67
Transmembrane Helix	222	240	0.74
Non-Cytoplasmic	241	245	0.72
Transmembrane Helix	246	265	0.91
Cytoplasmic	266	275	0.77
Transmembrane Helix	276	294	0.96
Non-Cytoplasmic	295	299	0.77
Transmembrane Helix	300	321	0.94
Cytoplasmic	322	345	0.96