YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60466428
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNNNNNNN NNNNNNNNNN NNNNPNNNNN ININVDHSYD DVDFNNKDPL FFSSGNEYMY  60
   61 RADEDDLEYD DDEDTNDGGG GGGGGSGNGG KKKKKKKEFL IDGFDENSES LVRSKDSDTI 120
  121 GYRIRNRLEY LEKGTKIIIF VGLITLTVVL CSIGLYFYAK DHKSPLVNYI HPTPVIVISL 180
  181 DGFRWDYLNR GLTPNIKKLI EDGSYHANYT IPQFPSKTFP NHYSIATGLY PENHGIISNH 240
  241 MYDPILNKTF DINKASVTDS EWYWGEPIWV TSEIHGIKSA CYFWPGCGVM IKDRFPTYNK 300
  301 LPFTMDISAK TVFDTVFKWA QLDASEKPYL SMAYVHEVDD AGHIYGPDSQ QVNDAIAYLD 360
  361 TQIGSLIDQL KSTNQYNSTN LIILSDHGMA SVPKNQSIYL DDLTNDPSFS TKCYIRDMSP 420
  421 ILSIFPIVGG LSIDEIYKSL TANSDINIKI YKKEDLPKEL FFSLNENKRI APIIGIVNLG 480
  481 YTLVQSKSTP TTSWELGNHG FNPSFEQMKS IFIGHGPNIK SLPIDDQNLP PFKNIEIYNF 540
  541 ISTLLNIKSP SPNNGTTLLT DKLYLK

Type	Start	End	Confidence
Cytoplasmic	1	136	0.94
Transmembrane Helix	137	159	0.91
Non-Cytoplasmic	160	566	0.89