YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60466630
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.81
Transmembrane Helix	111	131	0.95
Non-Cytoplasmic	132	144	0.88
Transmembrane Helix	145	165	0.92
Cytoplasmic	166	190	0.91
Transmembrane Helix	191	210	0.96
Non-Cytoplasmic	211	218	0.85
Transmembrane Helix	219	240	0.88
Cytoplasmic	241	246	0.84
Transmembrane Helix	247	269	0.82
Non-Cytoplasmic	270	295	0.91
Transmembrane Helix	296	317	0.93
Cytoplasmic	318	348	0.94
Transmembrane Helix	349	368	0.96
Non-Cytoplasmic	369	388	0.93
Transmembrane Helix	389	411	0.86
Cytoplasmic	412	421	0.82
Transmembrane Helix	422	438	0.95
Non-Cytoplasmic	439	447	0.82
Transmembrane Helix	448	470	0.86
Cytoplasmic	471	490	0.91
Transmembrane Helix	491	514	0.84
Non-Cytoplasmic	515	530	0.82
Transmembrane Helix	531	553	0.89
Cytoplasmic	554	568	0.86
Transmembrane Helix	569	589	0.90
Non-Cytoplasmic	590	635	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSEVKGNPI NNNNNNNNNK NKNNNNNSKL EFIFQVLVSI ILLYNTINKN NEISLIENFY  60
   61 KNSFLILSTT INICYQFFIK FNFTSKNLHS RSHKNNNDDN KLLVERQQSD WGLGLGISLI 120
  121 PNILLVILLT LNNNNNNNNN NYFTIISLYQ ISLSIISPLF LFNHINTYRN SKIWKPSSSS 180
  181 SHQPSLTKKE YTNFIIIFLI TLIISFTIFF DNEINFNNLK LTLFLFLLSF IFLVITKQLL 240
  241 YKLPNSFTIG EASIISQIIT ILLSESIRYF YNLFINNNNN NNNNDNSINK FSRINILYCF 300
  301 YSLIVGSLFI VFLNSLFNVA KSLRKLMTDY NNNNNNNNLI KNIIIKSSLF YFLVIFIIVG 360
  361 IIYPVLSYQL NGENPFIWVF EYIGSSDRIK YTIGLWMVLL VFTIFSYQPT IHSSIPMIIS 420
  421 RKYFHILAIV MFTPPLLLEG DDDMYKFMVL SYSVSISALI LLELLKYSLA PPLALPIRHY 480
  481 MDRFLDDRDS GLITTTHIYL LLGCSIPLFL TFFMDLIHLG SSGIQSNSYH FLSPFSGILT 540
  541 IGIGDTMASY FGVKYGRNKW FGSQKSIEGT VAGSIFTIIA SLLLYWFCSA SGSSLTISSI 600
  601 LKIIVTSTSC SLMEASTTQI DNLILPLFYF TLINL