YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60466626
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGINRKQLSN ALRYIGVGVK RIPRVIKELK RKGFHFFGLV IPIIYLLGLH YTTFFTTQVG  60
   61 VWILGTISLL YFIWEQMRLN IPAMQEFCVK MYGGMMREKE KDRMNGVFFY LLGSTICVYF 120
  121 FHPLIAVSSM LFLIIGDFTA ALVGISYGRT KIGNKSLEGS IAMFSVCWIL SYITFFNQNL 180
  181 AEHISFWGAI SATLIELFNP SWIDDNLTIP ILSAIIMKYM TARFGVDLPI YNNYV

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	51	0.92
Non-Cytoplasmic	52	57	0.60
Transmembrane Helix	58	74	0.95
Cytoplasmic	75	104	0.93
Transmembrane Helix	105	123	0.94
Non-Cytoplasmic	124	129	0.67
Transmembrane Helix	130	148	0.92
Cytoplasmic	149	156	0.79
Transmembrane Helix	157	176	0.88
Non-Cytoplasmic	177	206	0.54
Transmembrane Helix	207	221	0.38
Cytoplasmic	222	235	0.59