YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST3_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSSKVSTI LLLLFVVIIG SFCLTYGAPS TTNQKPLTSS EKKLLNDLYD RAKKAGGVVE  60
   61 FKSNLDSKKF VTAQNRPYDL LALFTSSNPK YGCSGCVQLK NQIESFSLSY EPYLNSAGFL 120
  121 EKPIFIVILE VDYNMEVFQT IGLNTIPHLL FIPSGSKPIT QKGYAYTGFE QTSSQSISDF 180
  181 IYSHSKIRIE PVKTFYEKYS VQILSFVVFL ASVRFLITAY RKRKSPMFWY FLTILLFACV 240
  241 IMGIFYDFIH KPNFYEFDHR QQTYNYFSRG SRSQTVSEGM IMGVSTIAIT LIFVFLSDIL 300
  301 PNYTNFSSKS KGLLFFMGMS SIIVLLFFQS LAFQIKYYRP LFFIPSVTYH Y

Type	Start	End	Confidence
Signal Peptide	1	27	0.86
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	198	0.99
Transmembrane Helix	199	218	0.94
Cytoplasmic	219	226	0.92
Transmembrane Helix	227	249	0.92
Non-Cytoplasmic	250	279	0.93
Transmembrane Helix	280	300	0.90
Cytoplasmic	301	311	0.87
Transmembrane Helix	312	333	0.94
Non-Cytoplasmic	334	351	0.94