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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: APC1_DICDI
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIINLGKV KPFGLSYIIN SNNNNNNNDD DDYNNEIRES ESSIPYEYYF CQNPLKSCFN  60
   61 EEQKILLQSE NDETDEKGMI LVNNSFFEEA QLFWYQNTVV WSSPFTVKKK FTLPLLLSSM 120
  121 IYPKINNAIW SHFPFLKDLS KQQQEQQQQQ HHQQSEYTTS SINNDIDDYY KYLCVLHNQG 180
  181 LNIYNSIGNS YQIVLPCKVI NIWSSKFGLL LERDSSLDST LLAGRDRSEI PSIFSILNPL 240
  241 EELKPVLTFS KSNNNNNNNN EALQQEFFSD TNQTIVFSST DYPILITYSN IENVHIIYQV 300
  301 SHVKPSSNAE NDNTNNNNNN NNTNTNISNN QTINNENGTT TTIINNSSIV NTSKPIFNFN 360
  361 NVSVNDQSFD YSNINISSSS PPFSSRNNNN NNNISNNNNT NNNTNNNNTN NSTSMMQQSI 420
  421 QQQQQQQQQQ ENSSFKFLNE DKSYFFDDES EFIIKSEIIF EEVLKDSTRL KSNTKSKSIF 480
  481 ITLDNNQKPL LCIEINSTLF CYNLFIDQKI KSTQSSSSNK NNNNNNDRNE GIEEKLKLEF 540
  541 SFSISSVQSS SPIFIESFYN NNEYTIPKGI NQPFIPLPTH ILVLNDHLLS VYWGPFKILD 600
  601 LPIDNNSNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNK RKPLYIKDST FNRVTIVYSD 660
  661 KEEIRFKITL GKSYLVSSCL GALSSFIPMN LLASIYQDFN DFHKFRINNL LNSNSNNNNN 720
  721 NNNSEEENDK EWISFQILLI SLLEKSLLKR PTDADTNKKI KENNHIKKEE NEDDWEFLLN 780
  781 SNYHKNYEKG LSFLSNLNIS DSSKVYPSNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 840
  841 NNNNNNNNNN CNIFIESIND FNFKTSLNSF IESIDDIIIA LHHQYEEFKI LTFNINYIYK 900
  901 LSKFLIQLSL HLELFNYVDY YFRDFGDLID FINQFKIKSK TSIDISSLKL QSLLNDDIFS 960
  961 IYKFVYNSFN ENNSETQQQQ QFNKEKFERN KLTKYHFKWI YKMKSLYSIQ SKINDNNSNN1020
 1021 KNNIKYISEK LIMKMVELDI KLEDLNSISF GLSLPLRESI KYCRSNPPID WPLKAYSLIE1080
 1081 REELIYKFNI DDVNNVKDGL KINSLLISGG KNKLLSNSTM NHGYNSLSTS ITNTLSTASS1140
 1141 SSNEMNSNSN ITSINGQSNG LPMNSTTNQM NSHQINNNGG GGGGGDDHHH HHSNSTSFDL1200
 1201 SKFYHGQDEF YKRITYLRFD TDQRIQEVYR LLSFSNRIQI NHTQENGVSD HDYLSQLQSK1260
 1261 LLLSVQRSIS LPIACGMFTI RSIKPLPTET INIPPIILNG FVGGTKTNIS LDPTMVQDNM1320
 1321 MVWPEFHNGV AAGLKVSADQ TEITNTWIIY NRPKQFNPSY SGLLMALGLQ KRLSSLAFTK1380
 1381 LFEYLASGHQ LTSVGLLLGI SCTKMGTMDM SIAKVLSVHI QSLHPPLSID LDVPSYVQIA1440
 1441 ALMGIGLLYC QTSNRRMTEV LLMEIGRKPI NDKPLDRDSY SLTAGMALGL VNLGKGANEG1500
 1501 SLTDLHVEDR LRSFIGISKE DSFDHMSTFF NQSYSTPSIS SNRNNNDLFN NGSNNNSSSN1560
 1561 GGGGGGGGNN NGNNSNNGNN GSSQFKKSNT ILESSKPNID LTAPGAIIAL SLIYLKTNNL1620
 1621 KISNYLSIPD TTFGLNYIRP DLVLLRILGR NLILWDSIKP QFQWIIDSVP LVVRKNVTID1680
 1681 RNSEKVFQEH SNNNNNNNKS RSSSSLNDFE SFILIFCNVI AGAAFSIGLK YAGSLNENAF1740
 1741 SLLMDLIQLF RKRQVYLNKC LLKKKKIEPT FDKVMRVTTE TCLNVVALSL SLVMAGSGNL1800
 1801 ETLKILRMLR SRIGNEITYG NHMAINMAIG FLFLGGGQYT LSTSNIAIAS LVCSLYPRFP1860
 1861 CSSTDNDYHL QAFRHLYFLA IDPRCLITRD VDTLAPCHVP IELTILNNDT MKLETKQLVT1920
 1921 PCLIPELSSI RSISIKSPRY WNIFINRGFV DGGVDININN NNNNNNNNNN NNNNNNNNNN1980
 1981 NNNNNNNNNN NNNKNILKNH PTIFLKRKIG HLPYTEDPEG FRSLSKSFPK SESISLYSSS2040
 2041 KGFQKNKEEF LKSFISDPNL LAFAKHFCTN QSNEFEHFNT TILYECLTQD TPEVIPLLLL2100
 2101 LNDIANNFEK YSNSNTTIVL ENLRIIFKFY SKWNNGYYLN NNNNKNNNND GWLIHSTFLD2160
 2161 SISTKIDEHF EKHFLNEQSN KKLLSNYLLT GELPNSLSTS IKRKFASFIS YYNLPNNKQF2220
 2221 QSFKSLLNNN NNNNSNAIYQ LWSSLGNQIN FNSINKIIEL STLSFDEDS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle