YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMP1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSNTIVLS NEKDIQLRIQ QLEERKEKRK NVKLLFSPIK TTKYFLYILK DTLVSGIRYF  60
   61 QTRPFLLFFI ALFASLTFIA VYVPGEHQKY MGKYSDLISD CIWWVGLGVL SSIGLGTGLH 120
  121 TFVLYLGPHI AKVTLAATEW NSVNFNVYGA NSFIQPATAM IGGVSFWMIL QKVQWAALFW 180
  181 GAGTAIGELP PYFVARTARL KGLKLEQEKK LKEQQEKPID EKDQPKKGLL ERLSEKVPAL 240
  241 IGNLGFFGIL AFASIPNPLF DLAGITCGHF LVPFWKFFGA TFIGKAVVKA HIQACFVILA 300
  301 FNMETLTMVI SFIEDKIPFL KNKIQPILEK ERQKLNSTVS ANSPKSLVGL AWDCVLFLMI 360
  361 SYFLMSIVDS SVQEYLIEKD NKKIELLKSK LEKQQPKETK KTK

Type	Start	End	Confidence
Cytoplasmic	1	64	0.90
Transmembrane Helix	65	84	0.95
Non-Cytoplasmic	85	101	0.87
Transmembrane Helix	102	126	0.89
Cytoplasmic	127	146	0.80
Transmembrane Helix	147	169	0.87
Non-Cytoplasmic	170	175	0.76
Transmembrane Helix	176	195	0.89
Cytoplasmic	196	236	0.96
Transmembrane Helix	237	255	0.91
Non-Cytoplasmic	256	261	0.63
Transmembrane Helix	262	283	0.67
Cytoplasmic	284	289	0.57
Transmembrane Helix	290	313	0.66
Non-Cytoplasmic	314	347	0.57
Transmembrane Helix	348	368	0.76
Cytoplasmic	369	403	0.57