YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60467232
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.88
Transmembrane Helix	15	35	0.58
Non-Cytoplasmic	36	89	0.61
Transmembrane Helix	90	112	0.84
Cytoplasmic	113	127	0.82
Transmembrane Helix	128	147	0.77
Non-Cytoplasmic	148	184	0.75
Transmembrane Helix	185	206	0.83
Cytoplasmic	207	216	0.85
Transmembrane Helix	217	240	0.92
Non-Cytoplasmic	241	270	0.96
Transmembrane Helix	271	292	0.87
Cytoplasmic	293	304	0.73
Transmembrane Helix	305	322	0.95
Non-Cytoplasmic	323	327	0.82
Transmembrane Helix	328	347	0.78
Cytoplasmic	348	378	0.76
Transmembrane Helix	379	399	0.74
Non-Cytoplasmic	400	547	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKLFNYIT SNQKILFLSL VLYRCINSLL INTFFDPDEY WQSLEVAHKL VFGYGYLTWE  60
   61 WSEGLRSFIH PLIFVYLFKF LKFLNLDSTF FIIIGPKLLS GFLAAIGDLY LYKLTLSIFK 120
  121 SKESAKWALI CQLISWYMFV CIVRTYSNSI ETILFIISLY YFPINNDENT INSKPKISIA 180
  181 LTTFAFLIRP TTAIMWLYIL PLHIFINLKS IKKIFNFLIF DCLFIGLLCL FIGCFIDYIY 240
  241 YERFVFLPYN FLYFNVLKNI SSFYGTHPFH WYWSQGLPAI GFTILPLFLL SIRSLWIKKS 300
  301 DRFKLHLAWC ALFTVGFYSL LAHKEFRFIL PILPIIMMYS GYYISTFTQL KTTTTTKESK 360
  361 ESKESYDPKS KPNISTTLIS PPKLIILLLL LNIPMSVFFS NFHQRSPIDI MHYINSDIVP 420
  421 KIKDNGTISV DLLMSCHATP FQSYIHNENL ILTLLECPPP LNENSPIDEK SLFYKDPLNF 480
  481 MNTQYKHIES NNSNKNSKNL KALPNYFIVE DELLDRLEPW LLKNSYRKEY HLKKPLDITS 540
  541 STVFIRV