YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG24_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVRNRNNV EKQSNNGAQL TEVQKKELAD LQKVHPANEF GGIIGTFLLT FILPVVVYWI  60
   61 WASIEFNNGY LLRPETLSVE GVKAFLAQLY HYVITYAYPT KEAAIIYFSW FGFQAFLQHV 120
  121 VPGRKVLGSP LPGGARLEYT LNGWASWWIT LIVIPIAIYF GLFKATILID NYAPMMTVVN 180
  181 IWSFVFTFLL KIHAKLKGEE ERMSGHFFYD FWMGFARNPR IGSFDLKLFC EARPGLILWV 240
  241 LMNFSIAAKQ LEVYGEISLS VILVCCFHFW YIADYYYHEE AILTTMDIIT EKFGYMLVYG 300
  301 DLSWVPFTYC FQCYYLYKHL VNGAPLHISI GYAIFVVSLK CFGFYLFRWV NSQKHDFRRN 360
  361 PEAPVWGKPA EFILTKRGTK LLCSGFWGIC RHLNYTGDII LSWAWCLPCQ FDSLAPYFYG 420
  421 IYFTSLDLHR CWRDHNACLV KYGDDWRAYC KRVPYNFIPG LI

Type	Start	End	Confidence
Cytoplasmic	1	39	0.92
Transmembrane Helix	40	62	0.92
Non-Cytoplasmic	63	102	0.90
Transmembrane Helix	103	123	0.84
Cytoplasmic	124	143	0.87
Transmembrane Helix	144	163	0.95
Non-Cytoplasmic	164	171	0.78
Transmembrane Helix	172	193	0.89
Cytoplasmic	194	252	0.81
Transmembrane Helix	253	272	0.87
Non-Cytoplasmic	273	327	0.59
Transmembrane Helix	328	349	0.91
Cytoplasmic	350	462	0.79