YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60467212
Protein type:	Transmembrane
Type Confidence:	0.51
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPKIKLFLA IAIVAYLISI FTILSFDGRN KIDAQRFPDK WKIVIQNNNN NNYNNNNNKN  60
   61 YKKTGNPFNK IDEVYYQNEK LNIKRSEQVR GAMKHAWEKY KEFSWGQDEL RPLTKSHKEW 120
  121 FGLGLTIIDS LDTLKIMNLD KEYKEGRDWV ANVLKQSKNT GMTVSVFETI IRVLGSHVTM 180
  181 YGLTNDEMYL EKAVEIGDLL LYAFPEDTKK PFPSSNIRLA THGKSYPGWT GGCVILSEVS 240
  241 TLFLEFNELS RISGDPKYKE YSDRVIDALS KMKTSIPGLF PVFVNQDANG FCGSFITIGG 300
  301 LGDSYYEYLL KMWIYTNGED EIYRRLFVES ADSIIEHLYK VSPKGDGYLS AMDHNSLTNI 360
  361 QEHLACFAGG MFALAAAANI TQDDKKSAKY MEVGEMITKT CVKTYLTSPS GLAPESFRVD 420
  421 PNSGNISWNV HGTYSFYILR PETVESLFIL YRLTGDIKYQ EWSWKIFEAI EDVCRHENGY 480
  481 NGLKNVDDRK SLDDTQESFF MAETLKYLYL SFQPSSVIPL DKYIFNTEAH PILIPKK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.45
Transmembrane Helix	7	26	0.49
Non-Cytoplasmic	27	537	0.95