YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG6_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	31	0.90
Non-Cytoplasmic	32	85	0.85
Transmembrane Helix	86	100	0.48
Cytoplasmic	101	120	0.57
Transmembrane Helix	121	143	0.86
Non-Cytoplasmic	144	151	0.52
Transmembrane Helix	152	171	0.68
Cytoplasmic	172	175	0.44
Transmembrane Helix	176	195	0.72
Non-Cytoplasmic	196	213	0.60
Transmembrane Helix	214	235	0.79
Cytoplasmic	236	246	0.68
Transmembrane Helix	247	268	0.91
Non-Cytoplasmic	269	289	0.73
Transmembrane Helix	290	307	0.53
Cytoplasmic	308	311	0.51
Transmembrane Helix	312	331	0.91
Non-Cytoplasmic	332	338	0.51
Transmembrane Helix	339	359	0.84
Cytoplasmic	360	364	0.57
Transmembrane Helix	365	388	0.69
Non-Cytoplasmic	389	401	0.47
Transmembrane Helix	402	420	0.85
Cytoplasmic	421	451	0.78
Transmembrane Helix	452	474	0.87
Non-Cytoplasmic	475	481	0.72
Transmembrane Helix	482	504	0.94
Cytoplasmic	505	518	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLNNKVGF SSLNISIVLL ILMISLLARY LVSLNGYSGQ SKPPMFGDYE AQRHWMEITT  60
   61 NLDIHQWYFN STDNDLMYWG LDYPPLTAYL SWVFGKIGEF IEPKSMELFT SRGYETDSGK 120
  121 LFMRMTVIVS DLFIWLPSVW FFVKTFYKQR NISQQISAFL FISLQPGLLL IDHGHFQYNG 180
  181 VSLGLGLFAI TFIIRDQQLL ASFFFVLSLN YKQMCLYYSP AFFFYLLLSN FEFTLKFSKI 240
  241 FSSIFKILKI GIVVIFTFIL CWIPFLSIEQ ASQVLFRLFP FARGLYEDKV ANFWCFISII 300
  301 INVKNLFTTD QLIKICLILT LVTMLPLVYG IKRIPKNKFV FIHSLINSSF SFFLFSFQVH 360
  361 EKTILLVSLP ISLLILHHPN MVWWFILIST FSMFPLLFKD GLVIPYFAIM ILYIVIGYQF 420
  421 KNSITRSNNQ FKHQNSQENL LASSDKSFYS IYLNYWFYLN IIGMVVCHLL YQFAPHPPHL 480
  481 PSLWLLLVCN FSFIHFILTF FYFIKEMTTF SPIKIKSN