YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SODC2_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLIISLLI VLSAISIISA DYQYGYCKFG SVGTVNQNIT GYVTLTAQDG ALNLVYNISS  60
   61 INLPTGSYAT AIMTYGYNPS NNTDLGGVFQ VDGKGTEQCQ SGGSRAGDLY NLYVNDNRIS 120
  121 SNFDSLTSVS IVDSPNSIIG RSIAIFQESY SCDLLKSSVG TSVGPLTTVV ASCIIGIGNS 180
  181 ANVPATNGVN TTTGNANTAG AYSSLSNTQY DAMVLLANTT KSPSAAIGGS VLFRSSSNSV 240
  241 SVNGIVSGVA KSVHGFHIHA FGDLTTVDGA SIGGHWLSGA QVHAFPENTS RHFGDLGNLC 300
  301 IFDNDFKNAY YYLSTSYFSF SGLVGRGFAV HAARDDGNTY VGGDRVAQGV VALIPKAATT 360
  361 LNQVPSNWKY EVICSNGTYT GESTIEPSPT PSTTPTPTET SQPGTSSYLA PFFVLILSSL 420
  421 ISVILIL

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	406	0.99
Transmembrane Helix	407	426	0.90
Cytoplasmic	427	427	0.94