YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60467903
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	78	0.99
Transmembrane Helix	79	100	0.91
Non-Cytoplasmic	101	117	0.89
Transmembrane Helix	118	141	0.90
Cytoplasmic	142	149	0.87
Transmembrane Helix	150	168	0.95
Non-Cytoplasmic	169	174	0.80
Transmembrane Helix	175	196	0.87
Cytoplasmic	197	206	0.91
Transmembrane Helix	207	230	0.88
Non-Cytoplasmic	231	250	0.91
Transmembrane Helix	251	273	0.94
Cytoplasmic	274	407	0.98
Transmembrane Helix	408	426	0.94
Non-Cytoplasmic	427	458	0.92
Transmembrane Helix	459	478	0.94
Cytoplasmic	479	489	0.80
Transmembrane Helix	490	513	0.77
Non-Cytoplasmic	514	542	0.79
Transmembrane Helix	543	562	0.90
Cytoplasmic	563	576	0.73
Transmembrane Helix	577	599	0.81
Non-Cytoplasmic	600	610	0.77
Transmembrane Helix	611	632	0.91
Cytoplasmic	633	669	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISINEFSDE NEEIGVILPN SVKISENKDD EYKNKLIDKQ NESIEEDGDE SIELEETDTQ  60
   61 KTNKNQLDDT ITPLPMMKIL AIFIIMLCDA INSLSIFPYV NFLVSSFNLT TDKNKLGYFV 120
  121 GILASSYYIA QLVSSFFWGW FSNYRGRRPS LLLGLIGSMI CLTGVGFSRN YPMVVVFRFL 180
  181 SGLLNGNVSI AKTMLGEITD SSNQAKAFSF IGLSWGVGGI IAPLIGGFFS NFCKKHPELL 240
  241 GDGNIFCRFP YLLPNIICVL FSLTGLVLGY VYLQESKTFS YSKIPSSSST NLKGLSKKKI 300
  301 KSSLQNLIKK TNFLKSNGFK QQIDENENLE ENYNNNENKV HDIYVDQEKE DDDNNNNINK 360
  361 EVNIRISSGI DKDMKSIPII LVEEELEEVE EDLNELPRPI GELYKDKPVI YSCLTYAFLG 420
  421 FMFTIFEEVF PNWSPVKRIY DPTTGVTTGG GFGFSSSNIG TVQSSAGIFA LIIQLFIFPR 480
  481 VVKSIGLLKA YRLALLIAIP TWVLLPELSR FCITTVVGGA SGSSMDDIHV EHPHIFWAIL 540
  541 FPVYMFQSFA SEITFITIIV MVSNSALPKD MALVNSIGMF LVSISRSFGP TIAGTLLAFS 600
  601 LSHSLPYPLD FHMVFVLLAI LTVLLFVASF SLPSSLNYDK QKSNLLERIK NGEISQDILL 660
  661 TQKEKPMIH