YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CY1_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSQKLLANG KLLSKLAIVS GVVGTATAIT TSTTLLSDDF VQPTSYPWEH RFPWQSYDHA  60
   61 AIRRGHQVYT QVCSTCHSLN LISYRHLANV AYTPEELKAM AADTTVMDGP DSEGDMFERK 120
  121 GQVTDFHPKP YPNSNAARFA NNGALPPDLS LVIKARGAHE DYVFSLLTGY CEPPAGVRVV 180
  181 GGQYFNPYFP GTKIAMAPPL ADGMVEYDDG TDNSMSQMAK DVSTFLCWAS EPEHDDRKKL 240
  241 GMKVLLGVSI IALPLFYWKR LKWSVIKTRK ISFKD

Type	Start	End	Confidence
Signal Peptide	1	28	0.84
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	239	0.98
Transmembrane Helix	240	258	0.58
Cytoplasmic	259	275	0.55