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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60463004
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITISIPDN LISHYLTFFL LVSTLLYILI TQKKANAINN NNNNNNNNNN NNINNNSSNN  60
   61 SSNDSNTDNN LCMKTQTFNK NSDINSGTIT DSTNNNFDNN TNNNLNKNNY NSEKKNKLIK 120
  121 NEIKGDIISN NNNNNNSNNN NNNNNNNNNN NNNNNNNNNN NNNNNNSSPL SLYSKKELIP 180
  181 LPAIQEESNN YQNNNITNNK PNLKVTLNNN NNTTTEPTKR IVSTSSSSSS DDEEPIPISP 240
  241 VSNSFLSPLN FTTGKKKSKK NQFYYVSTYY SSCDLPNKVM DENEIEEEDN NNIISNNNKA 300
  301 SNNNKKSNFS SHDDGYSNLL KQENKNSDLL NKGFRYNRGN NNSNKHPQQA QQQPPIQLLL 360
  361 EDEPSLKALE LNPQLADTTT TTTATTTTPS SAETPNTPLS MNSLESSSNL LKSTNLNKPQ 420
  421 KNSISKSLDD FMHEEHPNQI SSPIESCIKK LKKKKCILPQ VLQLKWRVKP KKVLIIKKYN 480
  481 DETINELIPG LVGWLKDIGI KVMKESDSND EYPLINDDPT IEVLSSTADP YSIDFIISMG 540
  541 GDGTILHTSS LFKTYIPPIL SFSLGSLGFL TAFDYSHHKE YIQSVIDGKC FVSYRLRLSC 600
  601 TVVTSDGNVT TTTTSTPTST STTTTTTKPM NPTSSDSTNA NNTPSGGSAS SGLINIGSNI 660
  661 NRHRYQVLNE VTIDRGTNPY LSNLECCCDG KLITIVQADG LIIATSTGST AYSLSAGGSL 720
  721 VHPTIPAILI TPICPHTLSF RPVILPSTSE LIIRVPETSR CPVWASFDGK NRQELKRGDY 780
  781 VIIKTSRWAV PVVCKTDESN EWFEKLAQNL NWNLRQVQKS FTAPHGGSIS SGSSGENSNN 840
  841 SSPLNLSTSS QNSTSPH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle