YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG11_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELIMMVFV LFTIVLLLTV SMTLAALIST IVVLVVPLII CIIALLIALR IKYGSKKDLS  60
   61 EVSIGFFHPY CTAGGGGERV LWCAIKSIQE EYPYVRCVVY TGDKESDDEI FNKVKKTFDI 120
  121 ELGRDNLEFI RLKKRKWVEA STYPRFTLIG QSLGSMILGW EALTKFVPTI FLDSMGYAFT 180
  181 FPIFSLIGGS TVACYVHYPT ISSDMISSVK SSSYSFNNDV SISSNKFKTI SKLIYYNIFS 240
  241 KIYQIVGSFS KLVMVNGTWT GNHIRDIWKK QFGYDLFIVY PPVDVKGRKQ LKLGWMDGTR 300
  301 KNMILSIAQF RPEKNHQLQL RTLAHLLEKY PSHREQPLNT KLVLVGGVRD QADRDRVEQL 360
  361 RNLSKELNIE DHVEFQIGIS SDQLNQLLSE ASVGIHTMYN EHFGIGVVEL MAAGVIPVAN 420
  421 NSAGPKEDIV RHEDTGFLAS TIQEYAEYIH EILAYREKYV EMQKKARDST DRFSESNFSN 480
  481 QFLKYIKPLI NQSLRNNNSS SKKRN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.90
Non-Cytoplasmic	28	30	0.67
Transmembrane Helix	31	51	0.89
Cytoplasmic	52	141	0.97
Transmembrane Helix	142	163	0.82
Non-Cytoplasmic	164	177	0.77
Transmembrane Helix	178	198	0.91
Cytoplasmic	199	505	0.81