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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60463267
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLRPSIWR SSPMQMVQLF VQIEAAHDTV DELGKLGLIQ FLDDNEHVNL FQRNFVNEVK  60
   61 RCDDMEKKLK FFEDQVKKEP KLQKLLPDNM LSVVDDDSQM DELEGRFDEL ESELKQVNAN 120
  121 QETLQRNYNE LIQLRHVLTK DSVFFQENPN LIEGEGHEHS ARSPLLAEDQ HVSEVAKQGV 180
  181 KLGFITGVMN TDKMPQFQRS LWRTTRGNNY VKDARIEEEI IDPQTGEETA KTVFIVFFQG 240
  241 ERLQQKIKKI CESFGANIYD CPDNSFERSN LLQKVTVRIT DLYEVLQRSK DHKRQTLAGI 300
  301 VPRLYSWKKK VLLEKSIYHT MNLFDYDVGR KCLIAKGWTP KDKIEEIQLA LRTATTRSGA 360
  361 LVPSVLSIIK TEGSPPTHFE TNKYTSSFQE IVNAYGIAHY REVNPAVLTI VTFPFLFGVM 420
  421 FGDVGHGALL LLSALGLISL EKKLAGKKLN ELIQMPFDGR YVLFLMSLFS IYVGFIYNEC 480
  481 FSIPMNIFGS QYNLNSTTGL YTYQHTDRVY PVGVDPLWKG APNELVYYNS FKMKLSIIFG 540
  541 VVQMSVGICF SLLNYLNQKG PIKIVNILTQ FVPQMIFLWS IFGYMSVLII LKWVVPYRSF 600
  601 EVDKVDPPFI LPTIIAMFLS PGGTPDVVFF SGQGAVQTAL LFLALISIPV MLVIKPLFMK 660
  661 RFHFQEVERK KLGHHEEEHD DEALYTGHHG EEFEMGEVFV HQVIHTIEFV LGAVSNTASY 720
  721 LRLWALSLAH SELSSVFWER ILIGQVERGN PFLAFVGFGA WLGASVAVLL LMESLSAFLH 780
  781 ALRLHWVEFQ NKFYIGDGVR FIPYSATRIL SGSEDDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle