YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST48_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKSILITF IIASALLSSV FADIGGKRTL VVLDDLSIKK THSTFFKNLE NKGYKLQFEQ  60
   61 SNTKVVLEKY GDFNFDNLIL FSPTSESLSF SSADVTRFID GGNNVLFAGS NVISENIRDI 120
  121 AAECGMEIEE DKTLIFDHFN YDKSQSDHSV LVADQFIDDS PIILQGLNKP ILFKGIGHKI 180
  181 RNNPLNYAIL TGSSTAFSAK AISGVSTKLM GKSCGLVSSL QARNNARVTF SGSLDLFSDK 240
  241 SFYSKIDNKE SGNKEFVERL VSWTFQERGI LRASELELVK ISTESNSTVA PDVFTIKDEV 300
  301 KYSLKVEEFD GIKGKWVPYV GSLQLEVIML DPYIRTFIKG DANGLYKIHF KLPDVYGVFT 360
  361 FEASIHKSGY STLDHIYRKP ILPFRHDSYE RFIPAAFPYY ATCFSMLIGT FIFSIIFLFN 420
  421 KDQLNK

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	395	0.99
Transmembrane Helix	396	419	0.92
Cytoplasmic	420	426	0.94