YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60463412
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.73
Transmembrane Helix	64	85	0.87
Non-Cytoplasmic	86	92	0.48
Transmembrane Helix	93	114	0.85
Cytoplasmic	115	154	0.45
Transmembrane Helix	155	172	0.61
Non-Cytoplasmic	173	186	0.81
Transmembrane Helix	187	208	0.91
Cytoplasmic	209	215	0.86
Transmembrane Helix	216	237	0.93
Non-Cytoplasmic	238	247	0.81
Transmembrane Helix	248	267	0.87
Cytoplasmic	268	285	0.77
Transmembrane Helix	286	308	0.90
Non-Cytoplasmic	309	334	0.93
Transmembrane Helix	335	357	0.93
Cytoplasmic	358	382	0.89
Transmembrane Helix	383	402	0.97
Non-Cytoplasmic	403	409	0.83
Transmembrane Helix	410	431	0.92
Cytoplasmic	432	441	0.87
Transmembrane Helix	442	461	0.96
Non-Cytoplasmic	462	467	0.81
Transmembrane Helix	468	487	0.97
Cytoplasmic	488	496	0.90
Transmembrane Helix	497	520	0.91
Non-Cytoplasmic	521	525	0.89
Transmembrane Helix	526	546	0.91
Cytoplasmic	547	562	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYLNRSSE QQNIPLLKNR KIYSLNSLIR KYPVNGFQDD DDNNNQQTNN GEGNLNKCLT  60
   61 VFDIISYGIG STVGAGVFVS IGIAISSYAG PGTLLSFLFS AIACLISAFC YSEFSARIPA 120
  121 SGSAYTFAYV SLGEYMGWFV GWNLTLEYAI SASAVARGWV GYFSVIFSIF GAKTPQFIQG 180
  181 YQINDWININ PIAPLIIVFC TIILVFGIKD SARFNMIITC INILTILFFI VLGSIYVKVE 240
  241 NWTPFLPFGF DGVFNACSVV FFSYVGFDSV TTLAGEVKNP KRDLPIGVIG SLVIATSLYI 300
  301 GVTLVLSGMV NFREVSQGSP LSDAFIHNGL DMKWAAMIIA FGTLTSLTAS TLCCLIGQPR 360
  361 IYLQMAKDGL FFKKFGELNK KQVPVFGILF TCGFASLLAI VLDLDNLTNM ISIGTLLAFT 420
  421 CVCAGVVVMR YRNEDGSENG PIPSTLVLFV LFVVACVFGA ASYNGWKIWI QIVLAVIQLA 480
  481 LIILLCFKKQ TLDKSTCNYF LCPLVPIIPC LGIIINTYFI MHLDSASFIR MAIWTVVGTI 540
  541 VYFVYSIRNS KLNNTNNNSY IN