YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60463477
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.74
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	436	0.98
Transmembrane Helix	437	459	0.94
Cytoplasmic	460	469	0.83
Transmembrane Helix	470	490	0.96
Non-Cytoplasmic	491	499	0.81
Transmembrane Helix	500	521	0.92
Cytoplasmic	522	541	0.92
Transmembrane Helix	542	563	0.94
Non-Cytoplasmic	564	590	0.97
Transmembrane Helix	591	611	0.87
Cytoplasmic	612	627	0.81
Transmembrane Helix	628	647	0.96
Non-Cytoplasmic	648	653	0.85
Transmembrane Helix	654	675	0.94
Cytoplasmic	676	816	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKIGNILK NVVILVIFSL FISKINSEVV KPNPAKPDEL VIAFMSPYFD PEYTQYSGAA  60
   61 EYALSKFNET FKTKYSKTIK LHTFTDTNDV IDSLDLVTMP VNGIVGPAYS GSSSTACLVF 120
  121 GAFAVPSISF YATGASLSNS GSYPYFQRVM PDDRLQVQAI LSLLKKNGWT RVSCIHTNED 180
  181 YGNGGADQLV QQSNAQGITV NTNQAIDPVD NGIAPEQLYY DIVFDNLEAA KSRVIVLYAL 240
  241 FPPDCLEIWK QAKARGFLGE GFTWIVTDGC AELTGGTDPD LLGVLATFPS YGLGTEAYTD 300
  301 FERTIVNDYN NNTGDAFYKG ASFSYDATYA MLMGIEAVLA KGGDPWDGEQ VRTELRNLKF 360
  361 NGITGTIAFD KNTGDRLYGE FALLNLINST KGSFDPIGKI NPDSGEITLK SDILYSGPTY 420
  421 KVPSDYQVVV FDRTLNIVLG VITGVCVLIV IGIGSVIALQ WRKFRYSSPL FCMFIIIGAL 480
  481 MGLASVFTLL PTPTTPLCSG FPWLLGLGYV IVFGTLFTKT WRTWRLFSNA RKFKIIRITN 540
  541 KFIITLVGGF VLLESIFMII WTAVDRPIPL AEPIFKAGEA QLQCTSDSEA WWYVFVFYKV 600
  601 FYILFGVFLA FKTRNVVDSL NESKPITLAL YNLTFVMVVA IALGFILRDN PIAIIVIQTI 660
  661 AILLGFTVTV SVLFLPKVWM ILSGQQHSMD SIGTSMDSMG RSNGNTTEAE STRGYTNKDY 720
  721 NNQSVGRSFS AHATGFKDVA PSNHPQLGIV YTGGDNFPRV GSSQTAASRS EAEINVSKDV 780
  781 LAKANKKNEE EFGEFFLKPS EDNILKKKKK KKNXNK