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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|89295687, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPEQEELD QLFHGEPIVI SQQLFEQTNH LKIANILKDI QKEIVKKNNT LKSIFSHNYV  60
   61 ELLNCSDLLI NINEYSKNIS KLSEKPAKSL QKIFDLNMSA ATLAKDGSVS HSDTVIKQDK 120
  121 DLPQQNLKNI SDSIDILISK TSKIYQKYKL FSIAARQSLS LKSLLKEIKQ SLSQQLPNSK 180
  181 DIYLIQQYIK NCTNQLRNQT RYFGDKEMLI NEICSEIFEQ GIRYILQQNE EVSQIDQNEE 240
  241 LEQMKQETRI WIYIDQVIAM CLLLQALRSQ KDVNIFLSSI PSLNEFSYQP QYIFSQNNNQ 300
  301 NIKTNQEQLI QLCLKESFNI IQEIKLKNLE KSANIAKFMN YFSDFYALVK YFNDQPFYSG 360
  361 FITLFEELNA GVCECSYLTY FTTFKSVQDI KDYQQSILPS DDSYNLKYQS DVLSIIQNIY 420
  421 NLQFNQLSTI IRAMLIHADE EDNKFFNHTF FQRMMFEEKN IKMIEHIKNV LDQIYQSNQN 480
  481 TKQQQQQHKD LKTILYTVWE DFYCEEIKKS ILGIQIEDMI VNFKKQILEK TGQNIEYTKY 540
  541 GDIKYQEHLQ NEYEQAKLKI QRFSNKLQII FGFEEKHDSA YNLEIMRNYL YENVNLLVEN 600
  601 YENSLVQMWE EQESNPSFDL MKVFIIFLFF HNYLVEQLLS SKIREGAYIE WDVEKFNEIQ 660
  661 IYIQDRIQFI SDEIIKKLSE EHYMLSYQEY FMIYLYELDE FLHNFIENGD VKQLEICKQI 720
  721 VLSIFQALEN EENGSIIKNL TNPSRLSQYD NMKFINITYI LGSKFSLQPR EYFEKEQEKE 780
  781 TIAQISKIRK EFKEKLIPIN QKQQNFLLFQ EQLVFIQSDN RGQKPQQIPA QKTGVSNSNL 840
  841 GSQNNLQTNS DTNKQKISQK DPQIQQPQQT QSVINAQLQQ TAKNLVGENL VSKKQQLVCF 900
  901 LNQLKIDWYI YCKISNFESW NMSCSSINKN ALHTYNIKKY FSSNQSQNQD QIQQEIQTTQ 960
  961 TTPQLHWLEK NLPEKYLPYV RLGRYEKPIG YKLLFWPCVW GAALGQPILS PLALAHLFGT1020
 1021 FYFGSAVMRA AGCIVNDMWD RDFDNKVERT KVRPLASGDL TMKQASIFLF FHLCGGLLTL1080
 1081 TQLNWFSIAL SFGIVPIAAL YPLFKRFTYY PQVVLGSCFN WGVMVGYAAA ADMINYNVAI1140
 1141 PAYIGGVLWT LIYDTIYAHQ DKLDDIKVGV KSTALAWGEN TKNVMYGLWG TQLSLFLYAG1200
 1201 IQGGLGLPFF PCCLASHLYL FRLIQDFNMD DPKTCWNFFV YNKNFGLLMF LSILIGKIFP1260
 1261 KAIEEDDEED LIEDERQTQQ NKNKIETQKP 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle