YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|118368417, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYCTQDYSGG EIYTPDPTNK VCCIRNCATC KNNGNENQVC FTCLVGYYLP SVGANTCNQC  60
   61 NSLCYTCNGP NSNNCLSCVT GQFLYQNNTC QKTCNTNNGY YVNGTNCLQC NSSCLTCNGP 120
  121 NSNNCLSCPS GSYFFQNNTC SSTCNTSNGY YINVNNCLQC NSSCLTCSGP SFNNCLSCPS 180
  181 GQYLFQNNTC SSTCNVNNGY YINGTNCLQC NSSCLTCNGS NSNNCLSCPS GQYLYQNNTC 240
  241 SSTCNTSNGY YISSTNCLKC NSSCLTCNGP NSNNCLSCPS GQYLFQNNTC SSTCNTNNGY 300
  301 YINSTNCLQC DLSCLTCNGS NSNNCLSCPS GQYLFQNNTC SSTCNINNGY YINGTNCLQC 360
  361 NSSCLSCNGP NSNNCLSCPS GQYLYQNNTC SSTCNTSNGY YISSTNCLKC NSSCLTCNGP 420
  421 NSNNCLSCPS GQYLFQNNTC SSTCNTNNGY YINSTNCLQC DLSCLTCNGS NLNNCLSCPS 480
  481 GQYLFQNNTC SSTCNINNGY YINGTNCLQC NSSCLSCNGP NSNNCLSCPS GQYLYQNNTC 540
  541 SSTCNTSNGY YISSTNCLKC NSSCLTCNGP NSNNCLSCPS GQYLFQNNTC SSTCNTNNGY 600
  601 YINSTNCLQC DLSCLTCNGS NSNNCLSCPS GQYLFQNNTC SSTCNINNGY YINGTNCLQC 660
  661 NSSCLSCNGP NSNNCLSCLS GQYQYQNNTC SATCNISNGY YINGTNCLQC NSNCLTCNGP 720
  721 NSNNCLSCPS GQYLFQINTC SSTCNTNNGY YINSTNCLQC DLSCLTCNGS NLNNCLSCPS 780
  781 GQYLFQNNTC SSTCNINNGY YINGTNCLQC NSSCLSCNGP NSNNCLSCLS GQYLYQNNTC 840
  841 SASCDTSNGY YINGTNCLQC NLSCLTCNGS NSNNCLSCPS GQYLFQNNTC SSTCNTNNGY 900
  901 YISSSNCLQC DSSCLTCNGS NSNNCLSCPS GSYLFQNNTC SATCNTNNGY YISSTNCLKC 960
  961 NSSCQSCNGP NSNNCLSCPS GQYLYQNNTC SASCDTSNGY YINGANCLQC NSSCLTCSGP1020
 1021 SSNNCLTCLS GQYLYQNNTC STNCNSSNGY YISNNNCLLC NLSCFTCNGP SSNNCLSCPS1080
 1081 GKYLFQNNTC SASCDTSNGY YIQGTNCLQC DSSCLTCYGP SSSNCLSCPS GQLLFQNNTC1140
 1141 STTCNINNGY YINGTNCLQC NSSCLTCNGP NSNNCLSCPS GQYLFQNNTC SSICNTSNGY1200
 1201 YILNYQCLLC DISCQTCNGP TSKNCQSCPS GQFLYADNSC QISCNTSLGY FVQGNNCLVC1260
 1261 DSSCQSCSGP LSTNCLTCYT GNFLYADKSC KPCNINNSYF ISQNQCIQCS PSCQTCNGEL1320
 1321 QTQCLTCKSG LYLYPDNSCQ QCNISNQQFL DSQQLCRNCN PSCLTCNGTG SNQCLSCPAG1380
 1381 QNLYPDYSCQ VCNIQNKQYI DNQGICRQCD PSCQTCNGQQ STQCTSCPTG TYLYPDSSCK1440
 1441 ICNTSNYQYL DTQNICRSCD PSCLTCNGPT FTQCLACSSG KNLFPNNSCN ICDINNKYYL1500
 1501 DNTQICRSCD STCLTCNGQT PQSCTSCPTG TNLYPDNSCQ ICDITNKQYL DNSNICRSCD1560
 1561 HTCQTCNNSS PKSCLTCPLG TYLHPDQSCN TCDTANQFYL DSQQICRQCD PSCQTCNGLS1620
 1621 ANQCLTCPQG SNLYPDNSCK FCDTSNKYYL DSSYVCQQCD SSCLTCNGST LNSCLSCSSK1680
 1681 PQGVQLYLYP DNSCNTCDTA NKQYLDASNI CRQCDSTCLT CNGPSATQCL SCPSGTYLYP1740
 1741 DSSCKICNTQ NQYYLDLQQI CRKCHPSCFT CSGSSSNQCL SCPLGTNLYP DNSCQVCYIN1800
 1801 NQQFLDSSNI CRKCDSSCLM CNGLQPNQCL SCPNGTNLFP DNTCQFCNLN NKQYLDMSQI1860
 1861 CRSCDSTCQT CTGPAKNQCS SCPSGTNLFQ DNTCSLCNIN NSFYIDSNSI CKPCDSSCKT1920
 1921 CNGSLPTQCI QCPSGKYLYP DNSCQVCNTN NLQFLDQNNI CRSCDLTCQT CNGSTPNSCL1980
 1981 TCPVGSNLYP DFSCKGCNTN KQQFLDQNQV CRNCDPSCQT CNGQLATQCL SCPSGTNLYP2040
 2041 DKSCKVCNLS KQQFLDSNQV CRSCDPTCYT CSGQTTQQCL TCNTGSNLYP DNSCKFCDTS2100
 2101 NQQYLDSNQI CRSCDPSCQT CNGSSANQCL SCPSGKNLYP DFSCRVCNVN NMQYLDQNNI2160
 2161 CRSCDSSCLT CNGSTPQSCL SCPSGTNLFP DNSCKVCDIT KQVYLDQSNI CRNCDHSCQT2220
 2221 CNGPSKNQCL TCLTGTYLYP DNSCQQCQTN NKQYLDSSNI CRQCDDSCLT CNGPNPTSCV2280
 2281 TCPNNNSLFP DFSCRFCNIN KQFYLDSNNI CRQCDDTCLT CSGPQSTQCL SCPIGQNLFP2340
 2341 NNSCNICNIS NQQFIDSNKI CQVCDTSCQT CKGPNNTDCL TCITGKYFYP DKTCNVCNTN2400
 2401 NKFYLDSNQI CQSCDSSCKT CNGSNKNSCL SCPQGTTLYP DNSCQFCDIS NQYYIDSKNI2460
 2461 CQKCDNSCQT CSGQTDKQCL SCPANTYLYP DNSCNSCNTS NQYFVDSNSV CQKCDTSCLT2520
 2521 CDGLFKINCT SCQNGFYLDT NKSCKSCDST CLTCNGSGKN SCLTCPSGQN IFKDKSCNIC2580
 2581 QINNKYFIDS SQVCQQCHPT CLTCNGLLQN NCLSCQNGFY LDSTKQCLPC DSSCSTCNGP2640
 2641 SPLQCLSCKQ GWNFYPDKLC KYCDLSNKYF LDNQNICQQC SSNCQTCKGH LTTDCLKCVS2700
 2701 GMTKFPDQTC NICNINNKQF IDSNQICQNC DNSCLTCNGL SSTNCTSCMQ GQNLYPDNSC2760
 2761 QVCDINNQKY LDSQNICRSC DKSCQKCNGP QKNQCISCIQ GLTLYPDNSC KFCDLDNNQF2820
 2821 IDNNNICQQC HSSCQKCNGL QNINCTQCSQ GLSFQSDNTC KMCNVSNGFF IDQKNYCKNC2880
 2881 DQNCITCNNT KQCTKCALSF TLFNGMCFNC QPGTYIDSIT MSCQSCNKKC KTCFGSLETQ2940
 2941 CIQCANPSQF FDQNNYCVDS CQTGYIKNLK TNKCQQCLYY SANLEKSVCV VECPDQFYAD3000
 3001 SNNNCQKCGN NCKHCLDQQT CTECNKNYSF KSSSNRECTI CQADEYKDEN NTCQKCKILN3060
 3061 CETCQSKDIC QTCAIGYFNK QTYCEYDQRY NHYTCSYSTQ EQCEQELKLI TKADISMQSA3120
 3121 QIASLGVQTV NTLLFAQGSQ FTYSLQIQQM IGNTKFSDKF KQLSIGSTFI DLNYQMNILS3180
 3181 VIPSPLSSNN SQNASQTQSN SNLQSQRILE DNASSSDLRK VQSIDLSKLF LSDALIYIII3240
 3241 TGIFIIIMAI CKLLSKRYEY FSDINEKKYS YIIKLQLLFS NYILISIFKA FKNIDFSTTL3300
 3301 QIASFALQFT ALMMQDQHGV QYPQQEYSSQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle