YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15677999, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	290	0.99
Transmembrane Helix	291	310	0.94
Non-Cytoplasmic	311	317	0.74
Transmembrane Helix	318	340	0.91
Cytoplasmic	341	351	0.93
Transmembrane Helix	352	374	0.92
Non-Cytoplasmic	375	416	0.92
Transmembrane Helix	417	438	0.89
Cytoplasmic	439	465	0.85
Transmembrane Helix	466	486	0.94
Non-Cytoplasmic	487	517	0.83
Transmembrane Helix	518	539	0.90
Cytoplasmic	540	556	0.89
Transmembrane Helix	557	576	0.94
Non-Cytoplasmic	577	612	0.78
Transmembrane Helix	613	635	0.78
Cytoplasmic	636	673	0.82
Transmembrane Helix	674	698	0.87
Non-Cytoplasmic	699	705	0.68
Transmembrane Helix	706	725	0.58
Cytoplasmic	726	738	0.41
Transmembrane Helix	739	763	0.83
Non-Cytoplasmic	764	766	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHYAIGDIQ GCFDELTALL GKIGFNHGTD TLWLTGDIVN RGPKSLETLQ FCIRHENSVQ  60
   61 IVLGNHDLHL LAVGCGEGAP KRSDTIEPIL KHPDGKKMLD WLRAQPLLIR EGSRVMVHAG 120
  121 ILPQWRITKA ESLAREAEAE LRGKKYVKFF SKMYGNKPAA WDEGLKGYAR LRFIVNAFTR 180
  181 MRALTFKNEL DFDYKSTVKK MPPYLRPWFK APDRQNLDAH HLRTLVLAGL HECRQRHLAG 240
  241 HRRAVGRTAD RRQPRNGRNY PSPSRRRHRL EKLRKITDRP TMHKILPIAH VLSRLGMLFS 300
  301 FILLIPAALS YAFSDGAYTA FATTATVTLS GSCIVRLATL RFRRELRPRD GFTLVLMLWL 360
  361 AFAAMAAMPM YLYFPNMGFT DAFFESMSGL TTTGATVIPH VDGLAPSVNF WRHMLNWLGG 420
  421 MGIIVLAVAI LPMLGVGGTQ LFKAEIPGID KESKMSPRIS QVAKKLWFGY TLITILAAAC 480
  481 LHFAGMGWFD AVCHAMATLS LGGFSTHDAS IAYYNSPLIE AVIIVFTIVG GINFANHFAA 540
  541 LNSRSLKTYW KDEECRTMLL LLSGSILAAA LYLWHTGYYA GFTESLRYTA FNFVSIGLAN 600
  601 GLANTDFAQW PLLISLWMFF LANILANSGS TGGGIKTIRA LVLFKFSLRE MMVLLHPKAV 660
  661 RTVKISGKAI PDRLALTVMS FIFIYFMTVV LFSFLLMASG MEFTTAFTAV IACITNAGPG 720
  721 LGEVGPAGNY AGLDVMQKWI CVTAMLLGRL EIFTVFILFT PAYWKK