YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34556401
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	151	0.93
Transmembrane Helix	152	176	0.82
Non-Cytoplasmic	177	197	0.87
Transmembrane Helix	198	219	0.82
Cytoplasmic	220	228	0.81
Transmembrane Helix	229	249	0.93
Non-Cytoplasmic	250	256	0.80
Transmembrane Helix	257	278	0.84
Cytoplasmic	279	403	0.90
Transmembrane Helix	404	423	0.95
Non-Cytoplasmic	424	455	0.90
Transmembrane Helix	456	476	0.87
Cytoplasmic	477	532	0.85
Transmembrane Helix	533	554	0.70
Non-Cytoplasmic	555	555	0.44
Transmembrane Helix	556	575	0.68
Cytoplasmic	576	584	0.77
Transmembrane Helix	585	608	0.89
Non-Cytoplasmic	609	609	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRTNTSDQL NAISDKNTKR KSLALDNEYH NNSSSEDDSS KIELSYTIPD NNNIISQETT  60
   61 TSVEDVLSVS SAPQNELRLR KQKSNNQDSP VDLNGVIVDV SKREKIFLKR KRQIDNKHGS 120
  121 DKSKYLSRFN DITFKAKSST IFESDEFYKT DFFGMYVLFW LATAFAMVNN LIHTYFENST 180
  181 PILQWTVVKV FKRDLFKVGL VDLAMYLSTY FAFFVQYACK NGYLSWKKVG WWLQAAFDGL 240
  241 FLFFWLWIAS EYCLDFPWIA KVFLVLHSLV FIMKMHSYAF YNGYLWSIYK EGLYSEKYLD 300
  301 KLTNGKVTLP KGHTKNETEK VLQESIAFTK YELEYQSHAT TENPDDHHVF DIDQTDKSIA 360
  361 KLQQEGLIKF PQNITLFNYF EYSMFPTLVY TLNFPRTKRI RWSYVFGKTF GIFGLIFLMI 420
  421 LIAENNLYPI VLRCEIARKL PVSERIPQYF FLLMDMIPPF LMVYLFTFFL IWDAILNAIA 480
  481 ELSKFADRDF YGPWWSCTDF SEFANQWNRC VHKFLLRHVY HSSISAFDVN KQSAAIITFL 540
  541 LSSLVHELVM YVIFGTLRGY LLLFQMSQIP LIIMSRSKFM KDKKVLGNII CWFGFISGPS 600
  601 IICTLYLVF