YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157080956, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTTQTTTE KKLTQSDIRG VFLRSNLFQG SWNFERMQAL GFCFSMVPAI RRLYPENNEA  60
   61 RKQAIRRHLE FFNTQPFVAA PILGVTLALE EQRANGAEID DGAINGIKVG LMGPLAGVGD 120
  121 PIFWGTVRPV FAALGAGIAM SGSLLGPLLF FILFNLVRLA TRYYGVAYGY SKGIDIVKDM 180
  181 GGGFLQKLTE GASILGLFVM GALVNKWTHV NIPLVVSRIT DQTGKEHVTT VQTILDQLMP 240
  241 GLVPLLLTFA CMWLLRKKVN PLWIIVGFFV IGIAGYACGL LGL

Type	Start	End	Confidence
Cytoplasmic	1	70	0.71
Transmembrane Helix	71	89	0.61
Non-Cytoplasmic	90	130	0.64
Transmembrane Helix	131	154	0.91
Cytoplasmic	155	187	0.78
Transmembrane Helix	188	207	0.74
Non-Cytoplasmic	208	233	0.74
Transmembrane Helix	234	255	0.74
Cytoplasmic	256	261	0.77
Transmembrane Helix	262	281	0.95
Non-Cytoplasmic	282	283	0.81