YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|192291871, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPITILDLVV LAVMLVSGLL AMVRGFMREV LSIAAWGAAA LVTLYAFQKL MPTARTYFSS  60
   61 ETVAAVVVIA GVFLGTLIIV SIITVRISDM ILDSRIGALD RTLGFLFGLA RGLLIVVVAY 120
  121 LFFNWLVPDK QRPEWVTNAK SRTVLQGTGD WLMTLLPDDP ENTILKRFKK NKPEEDQQQT 180
  181 EDSAAPGAND GYSKPARDGL KKLIEGKPAT R

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.52
Transmembrane Helix	5	26	0.82
Cytoplasmic	27	29	0.52
Transmembrane Helix	30	51	0.82
Non-Cytoplasmic	52	62	0.54
Transmembrane Helix	63	85	0.93
Cytoplasmic	86	102	0.56
Transmembrane Helix	103	126	0.88
Non-Cytoplasmic	127	211	0.61