YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pssA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAEQDGGSE TRAKPMPFDL NSPETPRRRF GPIPVRLLVP NVITLLAICA GLTAIRLSTE  60
   61 GRMELAVAAI VFAAVLDGID GRVARMIKGQ SKFGAELDSL ADFVNFGVAP GLILYFWQLH 120
  121 DLNNVGWIAA MVFAISGGLR LARFNATMDD PNKPAFAANF FTGVPAPAGA ITVLLPVYMG 180
  181 FLGAPTPPAV LTAVYTLLIA FLMVSRLPVF SGKTVKMRVA PEMVLPLFVS VVLFIALLIG 240
  241 YPWHILSACS VLYLLSLPVG WRSYRDHQRN AAADKGKGAP SGQKPTLVVN DPVPRDDDRP 300
  301 ARLN

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	57	0.94
Non-Cytoplasmic	58	64	0.78
Transmembrane Helix	65	84	0.90
Cytoplasmic	85	98	0.89
Transmembrane Helix	99	119	0.89
Non-Cytoplasmic	120	124	0.90
Transmembrane Helix	125	144	0.94
Cytoplasmic	145	155	0.91
Transmembrane Helix	156	179	0.88
Non-Cytoplasmic	180	188	0.72
Transmembrane Helix	189	210	0.89
Cytoplasmic	211	218	0.93
Transmembrane Helix	219	239	0.85
Non-Cytoplasmic	240	242	0.52
Transmembrane Helix	243	264	0.62
Cytoplasmic	265	304	0.63