YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hupC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEIARVQG AIDSAGERAR SLQTVYVYQA PVRLWHWVNA LLIVALCVTG YLIGSPPPSV  60
   61 PGEASASFQM GYIRFIHFAS GQTLIVFFIL RAYWAIVGNK YSKQLFYMPI TNRTWWWGMI 120
  121 YEFKWYAFLV RDPKKYIGHN PLAHVAMFTF MLFMIFMMCS GMALYAEGQG IDSWQYKMFG 180
  181 FMFWIFPNSQ DLHTVHHLGM WAIVVFVIVH IYAAVREDIL SRQSMISSII SGERLFRDDL 240
  241 PD

Type	Start	End	Confidence
Cytoplasmic	1	33	0.88
Transmembrane Helix	34	54	0.93
Non-Cytoplasmic	55	74	0.78
Transmembrane Helix	75	95	0.94
Cytoplasmic	96	143	0.83
Transmembrane Helix	144	166	0.91
Non-Cytoplasmic	167	192	0.89
Transmembrane Helix	193	215	0.91
Cytoplasmic	216	242	0.97