YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL12_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	92	0.93
Non-Cytoplasmic	93	99	0.75
Transmembrane Helix	100	120	0.93
Cytoplasmic	121	138	0.93
Transmembrane Helix	139	162	0.89
Non-Cytoplasmic	163	184	0.96
Transmembrane Helix	185	207	0.91
Cytoplasmic	208	247	0.98
Transmembrane Helix	248	267	0.91
Non-Cytoplasmic	268	301	0.89
Transmembrane Helix	302	323	0.92
Cytoplasmic	324	347	0.86
Transmembrane Helix	348	367	0.57
Non-Cytoplasmic	368	420	0.60
Transmembrane Helix	421	442	0.81
Cytoplasmic	443	446	0.63
Transmembrane Helix	447	470	0.87
Non-Cytoplasmic	471	485	0.62
Transmembrane Helix	486	515	0.79
Cytoplasmic	516	535	0.78
Transmembrane Helix	536	558	0.93
Non-Cytoplasmic	559	591	0.81
Transmembrane Helix	592	614	0.85
Cytoplasmic	615	632	0.67
Transmembrane Helix	633	656	0.83
Non-Cytoplasmic	657	665	0.73
Transmembrane Helix	666	685	0.78
Cytoplasmic	686	717	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHANASGG GGDEEMVEAS TLRHRHGAGK DANGVGTERQ LAAAAAEGEE EGPSSVERAF  60
   61 VDRAVPSWRE QLTVRAFVVS FFLSIMFSII VMKLNLTTGI IPSLNVSAGL LGFFFVRLWT 120
  121 AAIERVGLLR QPFTRQENTV IQTCVVAAYG IAFSGGFGTY LFGMSETIAK QATEANNAQN 180
  181 VKNPHIGWMI GFLFLVSFIG LLALVPLRKI MIVDYKLTYP SGTATAYLIN GFHTPEGAKL 240
  241 AKKQVKELGK FFLFSFVWGF FQWFYTAGDG CGFQSFPTLG LQAYKNRFYF DFSPTYVGVG 300
  301 MICPHIVNVS VLLGGILSWG IMWPLIRNKK GSWYAASLSE TSLHGLQGYR VFISIALILG 360
  361 DGLYNFVKVL IRTTAGFVVM MKKNSTLPVS NNGSPMVATE AISFDDERRT ELFLKDQIPK 420
  421 TVAFGGYVAV AAVSIGTLPQ IFPQLKWYYI LVAYVFAPVL AFCNAYGAGL TDWSLASTYG 480
  481 KLAIFIFGAW AGASNGGVLV GLAACGVMMS IVSTASDLMQ DFKTGYLTLA SPRSMFVSQV 540
  541 IGTAMGCVIA PCVFWLFYKA FADIGVSGTE YPAPYAIVYR NMAILGVDGF SSLPKHCLTL 600
  601 CYIFFAAAIA INLARDLAPS KVARFIPLPM AMAIPFYIGS YFAIDMFIGT VILFVWEMVN 660
  661 KAKAEAFAPA VASGLICGDG IWTLPQSILA LAKVKPPICM KFLSRSVNAQ VDGFLGN