YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61651673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.54
Transmembrane Helix	63	89	0.76
Non-Cytoplasmic	90	130	0.49
Transmembrane Helix	131	154	0.87
Cytoplasmic	155	161	0.47
Transmembrane Helix	162	185	0.81
Non-Cytoplasmic	186	192	0.45
Transmembrane Helix	193	214	0.85
Cytoplasmic	215	231	0.38
Transmembrane Helix	232	255	0.50
Non-Cytoplasmic	256	258	0.55
Transmembrane Helix	259	279	0.84
Cytoplasmic	280	286	0.87
Transmembrane Helix	287	308	0.92
Non-Cytoplasmic	309	317	0.78
Transmembrane Helix	318	337	0.94
Cytoplasmic	338	347	0.92
Transmembrane Helix	348	371	0.91
Non-Cytoplasmic	372	409	0.93
Transmembrane Helix	410	430	0.92
Cytoplasmic	431	438	0.84
Transmembrane Helix	439	457	0.83
Non-Cytoplasmic	458	458	0.39
Transmembrane Helix	459	481	0.64
Cytoplasmic	482	533	0.57
Transmembrane Helix	534	554	0.88
Non-Cytoplasmic	555	823	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAPESK HKSSLNSSPW SGLMALGNSR HGHHGPGTQS ASRAAAPKPG PPAGLSGGLS  60
   61 QPAGWQSLLS FTILFLAWLA GFSSRLFAVI RFESIIHEFD PWFNYRSTHH LASHGFYEFL 120
  121 NWFDERAWYP LGRIVGGTVY PGLMITAGLI HWILNTLNIT VHIRDVCVFL APTFSGLTSI 180
  181 STFLLTRELW NQGAGLLAAC FIAIVPGYIS RSVAGSFDNE GIAIFALQFT YYLWVKSVKT 240
  241 GSVFWTMCCC LSYFYMVSAW GGYVFIINLI PLHVFVLLLM QRYSKRVYIA YSTFYIVGLI 300
  301 LSMQIPFVGF QPIRTSEHMA AAGVFALLQA YAFLQYLRDR LTKQEFQTLF FLGVSLAAGA 360
  361 VFLSVIYLTY TGYIAPWSGR FYSLWDTGYA KIHIPIIASV SEHQPTTWVS FFFDLHILVC 420
  421 TFPAGLWFCI KNINDERVFV ALYAISAVYF AGVMVRLMLT LTPVVCMLSA IAFSNVFEHY 480
  481 LGDDMKRENP PVEDSSDEDD KRNPGNLYDK AGKVRKHVTE QEKPEEGLGP NIKSIVTMLM 540
  541 LMLLMMFAVH CTWVTSNAYS SPSVVLASYN HDGTRNILDD FREAYFWLRQ NTDEHARVMS 600
  601 WWDYGYQIAG MANRTTLVDN NTWNNSHIAL VGKAMSSNET AAYKIMRSLD VDYVLVIFGG 660
  661 VIGYSGDDIN KFLWMVRIAE GEHPKDIREG DYFTQQGEFR VDKAGSPTLL NCLMYKMSYY 720
  721 RFGEMQLDFR TPPGFDRTRN AEIGNKDIKF KHLEEAFTSE HWLVRIYKVK APDNRETLGH 780
  781 KPRVTNIVPK QKYLSKKTTK RKRGYVKNKL VFKKGKKTSK KTV