YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83572862, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYKRIVIAG TRSGVGKTSI ATGLMAALAA RGLKVQGFKV GPDYIDPGYH TLATGRPSRN  60
   61 LDTYLMTPAA VLEAFERAAA TSDIAVIEGV MGLYDGHRDT GSGSTATIAR LLAAPVLLVV 120
  121 DATSLGQSVA AEVLGYRSLD PGVNLAGVIL NRVSSEGHLE VLRQAIEEYT GIPVVGWLRR 180
  181 GSLPPLPSRH LGLIPAGEQE DLRPVLAELA ATIATGLDLE RVLDLATQAG PLPAGGSRLF 240
  241 ATAGAGVREK IPVAVALDKA FNFYYQDSLD YLAVLGAELL PFSPLEDDRL PAGAAGIIIG 300
  301 GGFPEIFLAP LTDNRPLLAD LRRQVARGIP LYAECGGLMY LAREIIDLEG SKWPMAGIVP 360
  361 AACRMQKSLA GLGYREARLC RETLVGHRDD CLRGHEFHYS TMTSKDTDFP PAYTWKHRGS 420
  421 IWYDGYGTRQ IVASYLHLHF LGNVGAAQNF LAACRAYKGG RNLETA

Type	Start	End	Confidence
Signal Peptide	1	32	0.76
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	466	0.95