YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_TRIEI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.92
Transmembrane Helix	30	47	0.93
Non-Cytoplasmic	48	53	0.80
Transmembrane Helix	54	77	0.91
Cytoplasmic	78	97	0.92
Transmembrane Helix	98	118	0.87
Non-Cytoplasmic	119	123	0.65
Transmembrane Helix	124	145	0.87
Cytoplasmic	146	151	0.82
Transmembrane Helix	152	171	0.93
Non-Cytoplasmic	172	177	0.75
Transmembrane Helix	178	201	0.85
Cytoplasmic	202	225	0.84
Transmembrane Helix	226	242	0.90
Non-Cytoplasmic	243	247	0.64
Transmembrane Helix	248	267	0.89
Cytoplasmic	268	286	0.87
Transmembrane Helix	287	309	0.88
Non-Cytoplasmic	310	328	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQVISHSLP RRHNNILQVF KSYYQLTKPR IILLLLITTA AGMWLGAKGE VSLFLLFVTL  60
   61 TGGALASGAA NAINCIYDSD IDYIMERTRW RPIPSGRVKP RDALIFALTL AATSFTLLTV 120
  121 FANLLAALLA MSGIVFYVGV YTHWLKRHSV QNIVIGGAAG AIPPLVGWAA VTGELSWAAW 180
  181 LLFAIIVVWT PPHFWALAIY IRDEYQEVGV PMLPVIEGNE ETARQIWVYT LILIPMTLLL 240
  241 VYPLHVSGAI YAVLATYLGV IFIKKAWQLL KDPSNKDVAR SLFKYSIYYM MLLCLVMVID 300
  301 SLPFTHGITT ALADSWQTFI GGAIAILF