YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116490794, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTYLITQI ELLLRLIVAG VCGFAIGYER KSRLKEAGVR THMIVALGAA LIMIVSKYGF  60
   61 VDVVQLKGYV LDPSRIAAQI VSGIGFLGAG MIFVRKQAIN GLTTAAGVWT TAGVGMAIGA 120
  121 KLYFIGVSAT VIVLLVQIIL RHNFKWMPLP ESEQIDIEFD KIADSIAFIQ KKFASNNIEI 180
  181 INLSADKNGN DSIHVELFVK LPQGYDPARL MDLFKDNPHV KSIEY

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.79
Transmembrane Helix	7	28	0.79
Cytoplasmic	29	38	0.86
Transmembrane Helix	39	61	0.88
Non-Cytoplasmic	62	75	0.85
Transmembrane Helix	76	94	0.93
Cytoplasmic	95	100	0.69
Transmembrane Helix	101	119	0.73
Non-Cytoplasmic	120	121	0.53
Transmembrane Helix	122	140	0.87
Cytoplasmic	141	225	0.72