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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90021580, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHSNNHAC CGGHTPSNTE HHNHEVDTKQ TQKFYVCPMH PEVRSPEPGD CPKCGMHLVI  60
   61 EEQSPEGALP VKTTGEHGQH DCCSSKSGGH HTGHHSQNTN QSLSQYNDVP SGHKGAVYTC 120
  121 PMHPEVRQTK PGVCPLCGMG LELESAAMAA DEPNPELVDF TRRFWVGAVL TLPVLILTMS 180
  181 PLVGLPQLRE MLGEHTAMWA EFILSTPVIL WSGWPFYVRA VNSFRTLNLN MFSLIGMGVA 240
  241 AAYIFSIFAV LLPGIFPEGF RNPETGVVGV YFEAAAVIVT LVLLGQVMEL RAREGTGKAI 300
  301 RALLDLAAKT ARVIRTDGSE EEIPLEDVQV GDRIRVRPGD KVPVDGVVVE GRSSIDESMI 360
  361 SGEPVPVEKT EGDNLTGATI NGTGSLIMEA TRVGSDTMLA QIVEMVAAAQ RSRAPIQKWA 420
  421 DMVAGKFVPA VIGVAILSFI AWAIWGPAPA YAYALVSAVA VLIIACPCAL GLATPMSIMT 480
  481 ATGRGAQVGV LIKNAEALER FEKVDTLIVD KTGTLTEGKP KLVAVLPEAG HEENEVLSLA 540
  541 ASLERGSEHP LAEAIVRGAE ERGITLQEAE DFEAVTGKGV KGTVKGQSVA LGNLALIRDL 600
  601 GLEAEALTQK ANTRRDQGET VMFIVLDGEV AGLVSVADPV KETTPAALKA LHKLGFRIIM 660
  661 ATGDNQRTAQ AVAAKLGIDE IRADVLPEDK ARIIKELQQQ GRKVAMAGDG VNDAPALAQA 720
  721 DVGIAMGTGA DVAIESAGFT LVKGNLDGIV RARRLSHATM KNIRQNLFFA LIYNSAGVPV 780
  781 AAGLLFPFFG ILINPMFAAF AMSASSISVV VNALRLRKAR IE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle