YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48862789, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLIQLLKTM GISRLCIFLF GAVLASTMLA GCGGSSSSEK SSGQVVTEPE SEPESEPESE  60
   61 PESEPESEPE SEPESEPDPA PDTAQDMRSE KRGLAYGYHS ENDLKAMQGK VKWWYNWDTQ 120
  121 ADANVKENYA SYGYDFVPMA WDENFNEEAL RSFLDNHPDV KYLLGWNEPN FMEQANLTPA 180
  181 EAAAHWPVLE AIAQDYNLKL VAPAVNYSPG NVDIPGTDDD YDPWLYLDAF FEACEGCQVD 240
  241 YIAVHCYMKY ESAFSWYVGE FERYNKPIWV TEWAGWDDGG PANMGEQMNF LSDTVRWMES 300
  301 NDNIYRYSWF LGRSSEGYDQ FPYLDVLLAD GELTPLGSVY TSIPSNDFRY KIPARIEAEG 360
  361 AHSLTGFKHL ATTDTTGLAK LIAASNEVAE YKLNVEEGGD YTLALRLASS ANSDIAIRVD 420
  421 GLLVYTFEDI NTGGVEAWMT FSSTPISLTA GDHILRVESK SSRFGFNWLE LTN

Type	Start	End	Confidence
Signal Peptide	1	34	0.84
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	473	0.99