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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|89952893, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPKKIGVLL VVALCVCAFF YFDLDRYIAV GLMRDWVAQS PVMASTIFAL LYFMVAALSL  60
   61 PGTGAMTLLA GAVFGLWWGF LLVSFASTIG ATVNMLVSRL LLRDWVTRRF RTSLERVNEG 120
  121 VEREGSFYLF SIRLIPLVPF FVVNPVFGLT NMRATTFYWV SQVGMVPGTL LYVNAGVALG 180
  181 ALDSISMGAI FTPQIIGSLV LLALFPWVAK AIVEAVKRKR TLAKYKKPKH FDANLIVIGA 240
  241 GSGGLVAAYI AAAVKAKVIL VEKDLMGGDC LNTGCVPSKA LIKAAKVAHQ TRNAQHLGIN 300
  301 AQPEIDFAKV MQHVKGAVKQ IEPHDSVERY TSLGVDCVQG EAEIISPYEV RVNGKVLAAK 360
  361 NIIVATGAAP SVRPIEGLDT INYLTTDTVW NLTQLPNRLV IAGGGPIGCE MAQAFARLGS 420
  421 QVTVVQRGDQ LLPKEDADVA EFALNTLRNE GVEVLLNAEL TAVAAGEGKS VLTISQNENT 480
  481 QHLECDQLLL ALGRTPRLQG FGLENIGVAI SEQGKLLVDR FLRTSIPTVY ACGDVIGPYQ 540
  541 FTHAASHQAW YASVNALFGG FKSFSVDYSA LPWVTFTDPE IARVGASEMD LKKRGVHYEV 600
  601 TRYSLVELDR AIAEGEAHGF VKVLTEEGKD RILGAVIVGS HGGEMITEFV SAIKHGKGLN 660
  661 AILGTVHSYP TWSEANKAAA GKWKQAHAPQ RLLQWVEKFH RWQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle