YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89953179, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSVQMAVA QVKTPADGKL VIQQGLAFLE DKSGALSFED VQTRGDWQLQ ASGNFSQGYN  60
   61 RSAWWLKFEL LNTQQANIWL LEVAYPILDY VTVYVGNPQG VYTKVEMGDK LPFDSRPIKH 120
  121 RNFLVPLDLT KREPVTIYIR VASSSSVQFP LVLWEPKRFS EFHSNEYLLH GFLFGGLFVI 180
  181 ALYNFLVFTV LRQRAYIYYV AYITCLTAFA ASLSGLSFRY LWPNATLWND ISILFSLAGL 240
  241 VLFASIFCWV FLDVKTFRQK FVIYCFQFYF VVLPLLIVGV FIFPYYIMIK LLILFGVLAC 300
  301 GLGFAAGIIA WLEGRPSAKY YTVAWALFYS GGIVLALTKL AIIEQTIFSE NALQFGSLIE 360
  361 AVLLSFALAE RMNIERALRL DAQKRAYDIE YQAKIELEKR VIDRTEELEL ANEKLRELSD 420
  421 TDQLTGLKNR RFLNHYLEDE FARSCRYGHR MSILLVDIDK FKHINDNYGH TVGDTCIQAI 480
  481 AKVLLESNRQ PSDLVARYGG EEFCIVLPET DVEGALHVAN RLLDMVRNTP IYAAANTINV 540
  541 TCSIGCYTAV PNSTKQIIAF IDNADTALYE AKKTGRDKVV VYKDDNPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	166	0.75
Transmembrane Helix	167	188	0.93
Cytoplasmic	189	197	0.76
Transmembrane Helix	198	218	0.93
Non-Cytoplasmic	219	230	0.83
Transmembrane Helix	231	252	0.94
Cytoplasmic	253	261	0.89
Transmembrane Helix	262	283	0.93
Non-Cytoplasmic	284	290	0.72
Transmembrane Helix	291	312	0.95
Cytoplasmic	313	320	0.91
Transmembrane Helix	321	343	0.92
Non-Cytoplasmic	344	351	0.88
Transmembrane Helix	352	369	0.65
Cytoplasmic	370	588	0.66