YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|196253921, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVSKKALSI SPSSTLAIDA KAKKMRSEGI DIIGFGAGEP DFDTPDHIKK AAIDAINAGF  60
   61 TKYTPASGTL ELKQAICRKF KRDNGLDYNP SNIVISNGAK HSLVNALQAI CNPGDEVIIP 120
  121 TPAWVSYPEM VKLADGVPVY IHCSEEEGFK FTIDKLEKAI TDKTRAIIIN SPSNPTGMIY 180
  181 SEEELRAVAD LAVSKGIYII SDEIYEKLIY DGYKHVSIAS FNDKIKDLTI VVNGVSKSYA 240
  241 MTGWRIGYTA SNEQIAKIMA NVQSHATSNP NSIAQKAALA ALEGPQEIID EMSAEFVKRR 300
  301 DYMVDRINSM NGVSCIKPNG AFYVMMNISK LIGKEIAGMK ITGSDSFAEA LLEKANVALV 360
  361 PGSGFGTDIH VRLSYATSME NIVEGLNRIE KFLSM

Type	Start	End	Confidence
Signal Peptide	1	22	0.79
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	395	0.99