YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48856884
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWFTQTIFS TSVGRKVIMA LTGLFLCTFL AVHLAGNFQL LHNDGGEAFN LYTKFMTSNP  60
   61 LIKAISYVNF AFIFGHVVWG AYLTIQNKKA RPVGYAYNDP GKTSSFSSRW MGVLGTMILI 120
  121 FLIIHLKDFK LAYMGLTHDL PMVTYTLENG DDVTVKNMYA EVVEEFHEPA VVAIYVLSMI 180
  181 ALGFHLYHGF QSAFQTLGLR HPKYTPAIKA VGFVFWGLIP LGFAIIPIIF LFCR

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	36	0.93
Non-Cytoplasmic	37	63	0.89
Transmembrane Helix	64	85	0.93
Cytoplasmic	86	105	0.96
Transmembrane Helix	106	126	0.93
Non-Cytoplasmic	127	169	0.94
Transmembrane Helix	170	190	0.91
Cytoplasmic	191	209	0.88
Transmembrane Helix	210	231	0.94
Non-Cytoplasmic	232	234	0.76