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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|48856042
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPEDKKKK KSPIPNPSQK TNYQIFLISA LLLVVVGIAY FSGSGGIQKT TKQRFFDMVL  60
   61 QHDVKKIVLV NDRNVEVTIT DEALKSGRYD ELLKRTNSPF SGTATGPQFQ FEITPSYDFE 120
  121 AKYEEFLNKE KVPKEYQVPI EVDSNRAEVT SQLVTLGFWV LLFVGTWFLF RRVSGGGAGG 180
  181 QIFNIGKSKA ALFDQDNKVK ITFADVAGLD EAKEEVKEIV DFLRFPTKFT KLGGKIPKGA 240
  241 LLVGPPGTGK TLLAKAVAGE AGVPFFSLSG SDFVEMFVGV GAARVRDLFK QAKEKAPCII 300
  301 FIDEIDAIGR MRGKGGNMPG SNDERENTLN SLLVEMDGFG TDSGVIILAA TNRPDVLDSA 360
  361 LLRPGRFDRM ISIDKPDIVG REQIFKVHLK PLKLGPDVDP KKIAAQTPGF AGAEIMNVCN 420
  421 EAALIAARRD KSEIDMQDFQ DAIDRVIGGL EKKTKIISPE EKKIVAYHEA GHAVAGWFLE 480
  481 HADPLVKVSI VPRGVAALGY AQYLPKEQFL YTVEQLTDEM CMALGGRAAE DIIFGKISTG 540
  541 ALSDLERITK MAYGMVSIYG MNDKIGNISF YDSKAGDYSF NKPYSESTAQ TIDEEARNIV 600
  601 HEAYNRTKKL LLEKQPELEI VAKQLLEKEI LFQSDLEKLI GKRPFEAETT YQAFTNKVDA 660
  661 PETLPDIIPN PAQQEGNSGS STYSTNEGTY NK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle