YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXL16_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGFGPLAL TLFLFFFALL TLPGDGNQGS VAGSCYCDRT IPSGTQIPPA TLNHMRKYLK  60
   61 TFHRCQFFIR FQLQSKSVCG GSQDQWVREL VNCFEHKQCG IGHGQSFHHQ KHVPQASTRI 120
  121 PEATEGKPPD TSTAVQFQST QQSTFPSGAP SLNKELTRHW ETTILPSGYG LEARPVAEAN 180
  181 EKQHKQQKEP GAGAGTQALV PVLSLLAIVF FLVAAMVCVL CNRRVTRQSS SGLQLCYTPV 240
  241 EPRPQGL

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	197	0.98
Transmembrane Helix	198	221	0.85
Cytoplasmic	222	247	0.94