YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48855117
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTIDNYLDS HYIHRSNWLR ATVLGANDGI ISISSLAIGV AAASSAREPI ILATVAGLVA  60
   61 GALSMAAGEY VSVSSQTDTE KADIERERKE LHEMPEDELN MLAQIYERRG LKKETARQVA 120
  121 IELTEKDALG THIRDELGIN EISQAKPIQA AFASGISFTV GGILPLLVIL VAPVKGMEYW 180
  181 LYGFSIVFLV ILGITSAKTG GASISKAILR ITIWGTIAMG LSALAGYLFG VNV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	49	0.81
Transmembrane Helix	50	71	0.89
Cytoplasmic	72	149	0.97
Transmembrane Helix	150	172	0.92
Non-Cytoplasmic	173	178	0.84
Transmembrane Helix	179	200	0.91
Cytoplasmic	201	210	0.75
Transmembrane Helix	211	231	0.93
Non-Cytoplasmic	232	233	0.96