YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48846804, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLREERFNKA DRIIAVGFWA NAGLMIMKLL AGYFGKSEAV FADGLESACD FIAILSTMIA  60
   61 LKVGRQPFDP KHPYGHGKAE SIAAVLVSLV IFSTGIGILV KAVHTIMDRT YQTPDLIAVL 120
  121 AALVTIAVKE WLYRYTVSTG KHLESPALAA VAKDHRKDAV TSIATLVGVF GAYLGAGVMD 180
  181 PLAAGLTAFF IFHIGYETCM GAIHDLMDGL PSGDLIQSIS EVAEAVDGVE HVHEIRGRRS 240
  241 GQYIIIDLKL DMDPEMTVKR SHDIATTVKR LIFEQFPNVG DVMIHINPHD EEHEDLIRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	32	0.94
Non-Cytoplasmic	33	43	0.71
Transmembrane Helix	44	61	0.77
Cytoplasmic	62	81	0.70
Transmembrane Helix	82	104	0.91
Non-Cytoplasmic	105	112	0.69
Transmembrane Helix	113	133	0.77
Cytoplasmic	134	158	0.73
Transmembrane Helix	159	179	0.71
Non-Cytoplasmic	180	181	0.48
Transmembrane Helix	182	203	0.60
Cytoplasmic	204	299	0.74