YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78195542, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLTTPFPS VNDVAFFALV LGRMAGIFAA IPLFGGRRVP MNIKVLAIFA LTVVCFPLIK  60
   61 AKIPQLPADM LSLGMLMIRE ALVGTCLGLL SLIIFAAVEF CGQICGIQMG LSIVSEIDPS 120
  121 RGSQLSIISI FQEMFATLLF LSLNVHHVFI NALVESYAVL PVGAWTMSEG LLNFLVVTIG 180
  181 QVFILAIKLS APIMVTLLLT SVMLGIMARA FPQMNVFFVS MPLNIGIGFI ILGLSLTVFL 240
  241 HTLRGSFGAL DEQIIALMKL MGKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.90
Transmembrane Helix	14	35	0.93
Cytoplasmic	36	42	0.80
Transmembrane Helix	43	63	0.90
Non-Cytoplasmic	64	80	0.84
Transmembrane Helix	81	107	0.82
Cytoplasmic	108	126	0.81
Transmembrane Helix	127	150	0.81
Non-Cytoplasmic	151	161	0.75
Transmembrane Helix	162	185	0.78
Cytoplasmic	186	190	0.62
Transmembrane Helix	191	211	0.87
Non-Cytoplasmic	212	220	0.68
Transmembrane Helix	221	243	0.85
Cytoplasmic	244	264	0.85