YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48845999, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGEKIDMSE SMRKGIYILP NLFTTGSLFA GFYGMVATMN GDFKTAALWI LVSSIFDGLD  60
   61 GKVARLTGTS SKFGVEYDSL ADVVSFCVAP ALLTYKWALQ PFGRLGWLAA FLFVACGALR 120
  121 LARFNVQVNT VESKRFVGLP TPAAASMVSA MVLLFYHFGW PSSYKKLAIL VLIYLLAFLM 180
  181 VSNFRYYSFK DPELIKRQPF AFLVLAVLLL VVIAAEPVVM LFLIFICYTF SGIVGFLMTW 240
  241 PRRRRLEKAI HNKHTKEEP

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	37	0.92
Non-Cytoplasmic	38	44	0.83
Transmembrane Helix	45	64	0.63
Cytoplasmic	65	78	0.55
Transmembrane Helix	79	95	0.66
Non-Cytoplasmic	96	104	0.70
Transmembrane Helix	105	124	0.93
Cytoplasmic	125	135	0.94
Transmembrane Helix	136	158	0.93
Non-Cytoplasmic	159	166	0.82
Transmembrane Helix	167	187	0.94
Cytoplasmic	188	197	0.80
Transmembrane Helix	198	215	0.94
Non-Cytoplasmic	216	220	0.74
Transmembrane Helix	221	240	0.96
Cytoplasmic	241	259	0.96