YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48845545, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALFFKLTL AIYFAATIAY LAYLVKPREV LGKVSCWILS AGFVAHCAYT VDRYLEAGHT  60
   61 PITNLHESLS FFSLAVVGIY ILFERKYRIF ILGSFVTPVA FLLMAASTGF PSAIMPLNPA 120
  121 LKSKWLMVHT VMAFLSYAAF SVAFGAAIMY LIQQHFLKSK KLGPMYQKLP SLDILDEINY 180
  181 RCLTIGFPLL TFAIISGAIW AESAWGTYWS WDPKETWSLI TWFVYAALLH GRLTTGWRGK 240
  241 KAAILAIVGF FVLLFTFLGV NLFLSGLHSY K

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.85
Transmembrane Helix	5	24	0.89
Cytoplasmic	25	33	0.70
Transmembrane Helix	34	50	0.89
Non-Cytoplasmic	51	62	0.77
Transmembrane Helix	63	83	0.91
Cytoplasmic	84	89	0.90
Transmembrane Helix	90	114	0.86
Non-Cytoplasmic	115	132	0.84
Transmembrane Helix	133	152	0.95
Cytoplasmic	153	177	0.93
Transmembrane Helix	178	201	0.86
Non-Cytoplasmic	202	215	0.87
Transmembrane Helix	216	234	0.89
Cytoplasmic	235	242	0.81
Transmembrane Helix	243	265	0.92
Non-Cytoplasmic	266	271	0.82