YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78194898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIETALRD LNRIDLLAGG DSSIHRLDPR AKVLVTLVYI ITVVSFSRYE ISGLIPFAIF  60
   61 PLAMVAVSGL PPEIVTRKLL LVLPFAALVG LFNPLFDREP LLALGSLAVS GGWVSFLSII 120
  121 LRAALTVGAA LVLVAVTGFT GVCLALQRFG VPRAFVVQLL FLYRYIFVLG DEGIRMSRAR 180
  181 ELRSFAGRGM GLKAYGSLVG SLLLRTWDRA ERIHMAMLSR GFRGEFHVRR ECSFGRRELA 240
  241 FTAGWCLLFM LLRFVNVPHL IGVLVTGVFP

Type	Start	End	Confidence
Cytoplasmic	1	32	0.80
Transmembrane Helix	33	49	0.54
Non-Cytoplasmic	50	50	0.33
Transmembrane Helix	51	71	0.69
Cytoplasmic	72	73	0.37
Transmembrane Helix	74	96	0.73
Non-Cytoplasmic	97	100	0.45
Transmembrane Helix	101	121	0.75
Cytoplasmic	122	122	0.30
Transmembrane Helix	123	151	0.74
Non-Cytoplasmic	152	153	0.31
Transmembrane Helix	154	168	0.54
Cytoplasmic	169	238	0.70
Transmembrane Helix	239	262	0.82
Non-Cytoplasmic	263	270	0.78