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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|78194171, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRELMAGV LLGSAGFLVN WFKLSLFFNV DFLFGSVFSM FALLRFGPAT GLLAAVIAAG  60
   61 CTWLQWHHPW AIVIFGCEAL CAGWLRNRKR MDLMLGDIIY WFSGGLVLVW LFYHQVMGFN 120
  121 AGATLLVALK QGMNGIINTL IAEALFLLSW RLRGGTELPS LRKWLGVILE GVVLVPAFVF 180
  181 AFLDTSWYFR QQMTRLQEST ARTAEVGNLT ISSWLDEEQH KLGMLVKLVG DPDHNPSQEM 240
  241 QRLLERYHAA HGSDTYRLGV MDRNHVTRAF SPRVDEKGVS TIGVWLGDRP YIAELNDPSH 300
  301 PIVFDAFMGK IGVPGPRLIM LAPCMVGGEY RGAVFSVVSL GHPAALLKGI VGKRDVNLTL 360
  361 LDRHRRVVAS TDSGKKFLEQ FALPKGGQLH SVGSNVSQWV PDPQPGGGPM KRWNRSFYMT 420
  421 EIALEPKSGF RLVVQSSLAP SLKEINNRAS ILLGVLAILT LVVVGLSRYF SRRLLAPFAM 480
  481 LGKVTSQLPV RIAQGEQISW RPAEVREEQE LQDNFRLMEN ALQNSFSELT AINEELEHRV 540
  541 TERTAELRIA KEAAENSELQ LRSITNSAHD AILMMDHQGS ISYWNPAAEQ ILGYSAAEAL 600
  601 GKNLHDLLTP ERYLADHLTA FSEFQQTGSG NAVGKTLELF ARRKDGQEIE VALSLSAVFL 660
  661 NGAWNAVGLL RDITEQKRIN ASLRMLSAAV EHSPVSIIIT DRDGRIEYVN PKSCQMTGYA 720
  721 FEELRGQNPR IMKGPTHPPE FYKNLWETIL SGREWYGEFH NRRKDGSLVW VMASISPIYD 780
  781 EKGEITHFVG VREEIEKQKK LQEELANIAQ LEKVARDRAE QANRAKSEFL AGMSHEIRTP 840
  841 LNAIIGMSDL LAETRLDGEQ SGYLSVVHSA GETLQGLIND ILDLSKIEAG MLQLDSVPFS 900
  901 LRDCIRQLTD ITSVKASSKG VTYSFSVKSA VPDWLMGDSL RLRQVLINLV GNAVKFTDSG 960
  961 GSVLLEVEPV QQSDAEVLIR FSVADTGIGI APEKLDTIFE SFSQADSSTT RRYGGTGLGL1020
 1021 AISRHLAGMM GGEIGVESTV GKGSCFRFTV PFAISRRTEE PLPKEQLPGD KLGRPLSILV1080
 1081 VDDNLANRTV LTAYFRRTEH TVECAVNGEE ALAKIKGGGY DVVFMDMEMP VMDGYTAVRL1140
 1141 VREWERETGR APLPVIALTA NALKEDQLRS LDAGCTAHLT KPIKKDKLLE IVGEYQQRPR1200
 1201 TNGKQGTNMD RDNVPDKIVV VCDPDLEDII PAYLEGRKTE GSVIRELAVN GQFDEVRTIA1260
 1261 HGLKGSGGCY GFSRITEIGR DMELAANDGN LVEVLKQLDT LEAYLQAIEV RYE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle