YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FTSW_GEOMG
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.86
Transmembrane Helix	17	37	0.95
Non-Cytoplasmic	38	55	0.76
Transmembrane Helix	56	75	0.89
Cytoplasmic	76	82	0.78
Transmembrane Helix	83	105	0.91
Non-Cytoplasmic	106	118	0.75
Transmembrane Helix	119	136	0.51
Cytoplasmic	137	145	0.53
Transmembrane Helix	146	166	0.90
Non-Cytoplasmic	167	193	0.48
Transmembrane Helix	194	213	0.91
Cytoplasmic	214	233	0.78
Transmembrane Helix	234	254	0.80
Non-Cytoplasmic	255	279	0.87
Transmembrane Helix	280	300	0.90
Cytoplasmic	301	312	0.78
Transmembrane Helix	313	333	0.90
Non-Cytoplasmic	334	345	0.74
Transmembrane Helix	346	367	0.93
Cytoplasmic	368	375	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLNFKLNLK EIERYDLVIL LMAVALTCFG VVMVYSASSV MATKKFHDGF YFLKRQGIYA  60
   61 ILGCAAMIVA MRIDYRQWRE YAVPILLGCL LLLLLVFIPG IGGAAKGASR WIRFPGFNLQ 120
  121 PSELAKIALI MYMAYSLDKK QEKVKFFSTG FAPYMVLLAI LLAILLKQHD LGSALTMGGV 180
  181 AILMLFAAGT RPRYILGMVV LTLPFLYFLV MNVDYRRRRI LAYLNPWEDP TNTGFQIIQS 240
  241 WLAFGNGGII GQGLGEGKQK MFFLPEAHTD FILSVVGEEL GLIGVIVIAA MFLMLVLRGV 300
  301 RVALMAQDPF GRFLAFGIVT LLGIQAFVNM GVVTGLLPTK GLALPFISYG GSSLIVTLFA 360
  361 VGILLNVSTR MKGTP